.. MMODES documentation master file, created by
   sphinx-quickstart on Wed Jun  5 16:02:26 2019.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

.. image:: logo_f.svg
   :width: 400px
   :alt: MMDOES logotype

Welcome to MMODES's documentation!
==================================

MMODES is a package built on top of `COBRApy <https://opencobra.github.io/cobrapy/>`_
and `SciPy <https://www.scipy.org/>`_ to allow fast set up of dynamic simulations with GEM models (dFBA),
isolated or in a consortium.

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   usage/installation
   usage/quickstart
   objects/consortium
   objects/dModel
   objects/experiment


Indices and tables
==================

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`